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  • Background
    • Using bash
    • Using sftp
    • Additional Coding Resources
  • Downloading Data
  • Alignment
    • de Novo Assembly
    • Reference Assembly
    • Merging Reads
  • Filtering/QC
    • Subsampling
  • PopGen Analysis
    • Tools
    • PCA
    • Admixture
    • F_st
    • ngsRelate
  • Piplelines
    • Colony
  • Post-Analysis
    • Uploading to NCBI
  • Contact
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Resources

Useful Content/Lessons

  • Software Carpentry: R for Reproducible Scientific Analysis
  • Data Carpentry: R for Data Analysis and Visualization of Ecological Data
  • Data Carpentry: Data Organization in Spreadsheets
  • Data Carpentry: Genomics Lesson
  • ANGUS: Analyzing High Throughput Sequencing Data; Exploratory RNAseq data analysis using RMarkdown materials
  • Ethan White and Zack Brym’s Data Carpentry for Biologists course
  • Jenny Bryan’s Stat545 course
  • Chester Ismay and Albert Y. Kim’s Modern DiveR book