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Background
Using bash
Using sftp
Additional Coding Resources
Downloading Data
Alignment
de Novo Assembly
Reference Assembly
Merging Reads
Filtering/QC
Subsampling
PopGen Analysis
Tools
PCA
Admixture
F_st
ngsRelate
Piplelines
Colony
Post-Analysis
Uploading to NCBI
Contact
Code
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Resources
Useful Content/Lessons
Software Carpentry: R for Reproducible Scientific Analysis
Data Carpentry: R for Data Analysis and Visualization of Ecological Data
Data Carpentry: Data Organization in Spreadsheets
Data Carpentry: Genomics Lesson
ANGUS: Analyzing High Throughput Sequencing Data; Exploratory RNAseq data analysis using RMarkdown materials
Ethan White and Zack Brym’s Data Carpentry for Biologists course
Jenny Bryan’s Stat545 course
Chester Ismay and Albert Y. Kim’s Modern DiveR book